DNA-Seq of Hepatovirus A - SRA

SRX4318445: DNA-Seq of Hepatovirus A
1 ILLUMINA (Illumina MiSeq) run: 5.4M spots, 3.3G bases, 1.5Gb downloads

Design: KAPA Hyper Prep Kit (24rxn) (cat# 07962347001, Roche)

Submitted by: University of Barcelona (UB)

Study: Deep-sequencing characterization of an outbreak of hepatitis A in the men-having-sex-with men group: evidence for positive selection of antigenic variants in vaccinated patients and implications for vaccination policy

PRJNA478337 • SRP151545 • All experiments • All runs

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Perform deep-sequencing analysis of ten overlapping fragments covering the complete capsid coding region of HAV. Evolution at the quasispecies level, in non-vaccinated and vaccinated patients, revealed significantly higher diversity in epitope-coding regions of the vaccinated group.

Sample:

SAMN09514206 • SRS3481021 • All experiments • All runs

Organism: Hepatovirus A

Library:

Name: M1

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: VIRAL RNA

Selection: PCR

Layout: SINGLE

Runs: 1 run, 5.4M spots, 3.3G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR7447893	5,421,531	3.3G	1.5Gb	2019-05-31

ID:: 5805830

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